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Article title: Do acid-tolerant picocyanobacteria exist? A study of two strains isolated from humic lakes in Poland

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Jasser et al. Supplementary File Article title: Do acid-tolerant picocyanobacteria exist? A study of two strains isolated from humic lakes in Poland Journal name: Hydrobiologia Authors: Iwona Jasser 1,3,
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Jasser et al. Supplementary File Article title: Do acid-tolerant picocyanobacteria exist? A study of two strains isolated from humic lakes in Poland Journal name: Hydrobiologia Authors: Iwona Jasser 1,3, Anna Karnkowska-Ishikawa 2 and Ryszard J. Chróst 1 Author affiliations: 1 Microbial Ecology Department, Institute of Botany, University of Warsaw, ul. Miecznikowa 1, Warsaw, Poland. 2 Department of Plant Systematics and Geography, Institute of Botany, University of Warsaw, Al. Ujazdowskie 4, , Warsaw, Poland. Corresponding author: Iwona Jasser, number: ; Fax number: Supplementary File 1 Mean and maximum numbers of picocyanobacteria and their contribution to overall autotrophic picoplankton numbers and biomass noted in humic, lowph lakes as well as ph and color of water of the studied lakes Supplementary File 2 Names and major accessory pigments of strains isolated and/or used in this study. Basic chemical and biological characteristics of lakes from which picocyanobacteria were isolated in this study (2008) and in Mean values for chlorophyll a, Secchi depth (SD), dissolved organic carbon (DOC) and ph during the summer in the year of strain isolation, 2 ph, TP and TN of lake water taken for the experiments in 2010 and 2011 Supplementary File 3 The GenBank accession numbers for all the 16S rdna sequences used for phylogenetic analysis (given in bold font for sequences determined in the experiments) together with group affiliation and isolation details (location, habitat) Supplementary File 4 Extended Fig. 1 with branch support values (approximate likelihoodratio test probabilities) Jasser et al. Supplementary File Supplementary File 1 Mean and maximum numbers of picocyanobacteria and their contribution to overall autotrophic picoplankton numbers and biomass noted in humic, lowph lakes as well as ph and color of water of the studied lakes Lake Kruczy Staw 2005 Smolak Du!y 2005 Smolak Du!y 2006 ph Mean Max. % share % share Color mg numbers numbers in in Pt L -1 Cells ml -1 Cells ml -1 numbers biomass * * * * * * Jasser et al. Supplementary File Supplementary File 2 Names and major accessory pigments of strains isolated and/or used in this study. Basic chemical and biological characteristics of lakes from which picocyanobacteria were isolated in this study (2008) and in Mean values for chlorophyll a, Secchi depth (SD), dissolved organic carbon (DOC) and ph during the summer in the year of strain isolation, 2 ph, TP and TN of lake water taken for the experiments in 2010 and 2011 Lake Strain name Main access. pigment Mean Chl. a 1 (!g L -1 ) Mean SD 1 (m) DOC 1 mg C L -1 Mean ph 1 ph 2 TN 2 (mg L -1 ) TP 2 (!g L -1 ) Smolak Du y SM0708 PC Kruczy Staw KS0708 PE Be#dany BE0807K PC Miko#ajskie MI0507B PE Supplementary File 3 The GenBank accession numbers for all the 16S rdna sequences used for phylogenetic analysis (given in bold font for sequences determined in the experiments) together with group affiliation and isolation details (location, habitat) Strain name Clade 16S Accesion nr Country/Continent Lake/Ecosystem rdna 16S rdna 0BB21S01 AJ Italy Bubano Basin 0BB22S0 AJ Italy Bubano Basin 0BB26S03 AJ Italy Bubano Basin 0BB46S01 AJ Italy Bubano Basin 1BB04S06 A AJ Italy Bubano Basin 1LT47S01 A FM Italy Lake Trasimeno 1tu21s05 A AM Finland Lake Tuusulanjarvi 1tu39s01 AM Finland Lake Tuusulanjarvi 2LT05S01 FM Italy Lake Trasimeno 2LT07S05 FM Italy Lake Trasimeno 2LT34S03 A FM Italy Lake Trasimeno 9NSWBact_8 Marine DQ East Pacific Rise A Marine AY Arabian Sea ABRAXAS Antarctic AF Antarctica Abraxas ACE Antarctic AF Antarctica Ace ACT9802 A GQ Hungary Lake Balaton ADK-MOe02-56 EF USA Adirondack lake AP10.7 AY United Kingdom Summerset, Abbots Pool AP10.8 AY United Kingdom Abbots Pool, near Avon ARTE1_270 GU South Atlantic Ocean B34 FJ South China Sea B7 FJ South China Sea B9801 A DQ Baltic Sea BE 0807 D E GQ Poland Be!dany BE 0807 F Cz FJ Poland Be!dany BE 0807 G Cz FJ Poland Be!dany BE 0807 I Cz FJ Poland Be!dany BE 0807 J A GQ Poland Be!dany BE 0807 K A FJ Poland Be!dany BE 0807 L Cz FJ Poland Be!dany BGS171 A AF Hungary Lake Balaton BN23 A HM China Lake Taihu BO 0014 Subalp. Cl. II AF Cent. Europe Constance BO 8801 A AF Cent. Europe Constance BO 8805 Subalp. Cl. II AF Cent. Europe Constance BO 8806 A AF Cent. Europe Constance BO 8807 B AF Cent. Europe Constance BO 9404 B AF Cent. Europe Constance BO A AF Cent. Europe Constance BS2 HM China Lake Taihu BS20 A AF Baltic Sea CB11C04 EF USA Chesapeake Bay CENA106 EF Brazil CENA108 EF Brazil CWP AY United Kingdom Cotswold Water Park CWP AY United Kingdom Cotswold Water Park D8W_4 HM China Yellow Sea Eum14 Marine AY Red Sea EW15 A DQ GL A AJ France GrandLieu H-C02 A DQ Antarctica Lake Heart HOS AF Japan Brackish marshalnd IR 48 AF Japan brackish marshland, Iriomote is. JJ11D3 Subalp. Cl. II AM Czech Republic Vranov JJ12A2 AM Czech Republic Jevisovice JJ13-6 Subalp. Cl. II AM Czech Republic Znojmo JJ17-5 I AM Czech Republic Pilska JJ19-11 A AM Czech Republic Trnavka JJ19B5 AM Czech Republic Trnavka JJ2-3 AM Czech Republic Ceske Udoli JJ21R2 A AM Czech Republic Rimov JJ21RS4 AM Czech Republic Rimov JJ22-10 A AM Czech Republic Lipno JJ22K AM Czech Republic Lipno JJ23-10 A AM Czech Republic Husinec JJ27STR Cz AM Czech Republic Stribrec JJ7-3 AM Czech Republic Brezova JJ7-9 A AM Czech Republic Brezova JJ8-4 A AM Czech Republic Zlutice JJ9-A3 AM Czech Republic Stanovice JJ9-C6 AM Czech Republic Stanovice JJCD AM Czech Republic Svet JJM10A4 B AM Czech Republic Machovo jezero JJM10D4 Cz AM Czech Republic Machovo jezero JJM10D5 AM Czech Republic Machovo jezero JJNV AM Czech Republic Novy Vdovec JJR2A5 AM Czech Republic Rimov KORDI-30 Marine FJ East Sea KS 0708 B JQ Poland Kruczy Staw LB B3 AF Japan Biwa LB G2 AF Japan Biwa LB P1 H AF Japan Biwa LB03 AY Japan Biwa LD9 AJ Netherlands Lake Loosdrecht LM94 B AF Italy Lago Maggiore MA 0607 B FJ Poland Majcz MA 0607 A M FJ Poland Majcz MA 0607 B M GQ Poland Majcz MA 0607 C M FJ Poland Majcz MA 0607 D A GQ Poland Majcz MA 0607 E M GQ Poland Majcz MA 0607 F M FJ Poland Majcz MA 0607 G M FJ Poland Majcz MA 0607 H M FJ Poland Majcz MA 0607 I M FJ Poland Majcz MA 0607 J M FJ Poland Majcz MA 0607 K FJ Poland Majcz MA 0607 L M FJ Poland Majcz MA 0607 M A GQ Poland Majcz MA 0607 N A GQ Poland Majcz MA 0707 A A FJ Poland Majcz MA 0707 B A FJ Poland Majcz MB11A04 Marine AY USA Monterey Bay MB11E08 Marine AY USA Monterey Bay MB11E09 Marine AY USA Monterey Bay MH 301 AY Austria Mondsee MI 0407 A GQ Poland Miko!ajskie MI 0507 A B FJ Poland Miko!ajske MI 0507 B B FJ Poland Miko!ajske MI 0607 A M GQ Poland Miko!ajske MI 0607 C M GQ Poland Miko!ajske MI 0607 D M GQ Poland Miko!ajske MI 0607 I M FJ Poland Miko!ajske MI 0608 A M FJ Poland Miko!ajske MI 0608 C M FJ Poland Miko!ajske MI 0608 E M FJ Poland Miko!ajske MI 0608 F M FJ Poland Miko!ajskie MI 0608 H A GQ Poland Miko!ajskie Minos01-AC6F1 Marine AY Red Sea MIT 9211 Marine AF MIT 9215 Marine AF MIT 9302 Marine AF MIT 9312 Marine AF MIT 9313 Marine AF MLCB EF USA Mono Lake MLS1228cl3 AF USA Mono Lake MW 10#1 B AY Austria Mondsee MW 101C3 I AY Austria Mondsee MW 15#2 B AY Austria Mondsee MW 6C6 H AY Austria Mondsee MW 74D3 B AY Austria Hallstattersee MW 74D6 B AY Austria Hallstattersee MW 76B2 B AY Austria Hallstattersee MW 77D1 B AY Austria Hallstattersee MWLSB18 FJ South China Sea Lingshui Bay MWLSB264 FJ South China Sea Lingshui Bay NAN AF Japan NATL1 Marine AF brackish marshland, Nagasaki NIES 42 A AB Japan Kasumigaura NIES 43 A D89036 Japan Kasumigaura NS01 AY Red Sea Otu28s07 AM Finland Lake Tuusulanjarvi OTU34C148 AM Finland Lake Tuusulanjarvi P 211 I AF Arctic Bylot island tundra pond P 212 A AF Arctic Bylot island tundra pond PCC 6301 Root X03538 PCC 6307 A AF USA lake water Wisconsin PCC 6904 A AF USA Stream in California PCC 7001 AM PCC 7009 A AF USA low salinity brine pond, CA PCC 7902 A AM USA Polar bear hair, Zoo PCC 7918 A AF Finland pond PCC 7942 Root AF PCC 8916 A AF France brackish marshland PCC 8966 A AF PCC 9005 AF Thailand pond PCC 9511 Marine AF PENDANT Antarctic AF Antarctica Pendant PS 680 AF Japan Biwa PS 715 A AF Japan Akan PS 717 E AF Japan Biwa PS 838 AF PS 840 Subalp. Cl. II AF Russia marine coast PS 845 AF Russia marine coast RS 9920 Marine AY SAG 3.81 B AF Switzerland Zurich Sai001 A GU Germany reservoir Saidenbach Sai002 A GU Germany reservoir Saidenbach SM 0708 A JQ Poland Smolak Duzy SN 0507 B FJ Poland niardwy SN 0807 A GQ Poland niardwy SRODG098 FM T7cc1 AF TAGS AF TAK Marine AF311220 TK-SE6 DQ Tanzania Lake Tanganyika UBR AF Japan brackish mangrove, Iriomote is. WH 5701 Subalp. Cl. II AY WH 7803 Marine AF WH 8018 Marine AF WH 8101 Marine AF XZELH119 EU China Lake E'ling XZELH129 EU China Lake E'ling XZELH139 EU China Lake E'ling XZELH21 EU China Lake E'ling XZELH38 EU China Lake E'ling XZELH51 EU China Lake E'ling XZELH52 B EU China Lake E'ling XZNMC23 B EU China Lake Namucuo XZNMC29 B EU China Lake Namucuo XZNMC30 EU China Lake Namucuo XZNMC41 B EU China Lake Namucuo XZNMC44 B EU China Lake Namucuo XZNMC48 EU China Lake Namucuo XZNMC58 EU China Lake Namucuo XZNMC71 EU China Lake Namucuo XZNMC79 EU China Lake Namucuo XZNMC9 B EU China Lake Namucuo XZTSH49 B EU China Lake Tuosuhai XZXXH51 B EU China Lake Xinxinhai XZZLH13 EU China Lake Zhaling XZZLH26 EU China Lake Zhaling XZZLH27 EU China Lake Zhaling XZZLH30 EU China Lake Zhaling XZZLH41 EU China Lake Zhaling XZZLH55 EU China Lake Zhaling Y0011 A AY Netherlands Schiermonnikoog Supplementary File 4 Extended Fig. 1 with branch support values (approximate likelihoodratio test probabilities)!
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