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Using the NCBO Web Services for Concept Recognition and Ontology Annotation of Expression Datasets

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1. Using the NCBO Web Services for Concept Recognition and Ontology Annotation of Expression Datasets Simon N. Twigger 1,2 , Joey F. Geiger 2 and Jennifer R. Smith 1 1…
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  • 1. Using the NCBO Web Services for Concept Recognition and Ontology Annotation of Expression Datasets Simon N. Twigger 1,2 , Joey F. Geiger 2 and Jennifer R. Smith 1 1 Human and Molecular Genetics Center and 2 Biotechnology and Bioengineering Center, Medical College of Wisconsin, Milwaukee, WI, 53226, USA.
  • 2. Rat Genome Database http://rgd.mcw.edu
  • 3. The Problem
  • 4. GEO + Ontologies + OBA
  • 5. http://gminer.mcw.edu
  • 6. Browse/Review Results
  • 7. Link to Genes? Probeset 1369048_at (Gabrd) was P resent in sample GSM132484 which was from hippocampus . Can we compile all such results for Gabrd, for the Hippocampus, etc?
  • 8. RDF
  • 9. Goals4 SWAT4LS <ul><li>Present results/methods so far and get feedback </li></ul><ul><li>Advice on correct RDF for Rat Genome Data </li></ul><ul><li>Advice on RDF for GMiner/GEO results </li></ul><ul><li>Advice on triplestore & publishing Linked Data </li></ul>
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